Ramin.
PhD Student in Bioinformatics.
Iām a Bioinformatics PhD student at the Georgia Institute of Technology, conducting cancer genomics research in the Yu Lab at Emory School of Medicine.
Hi, my name is
</> About Me
I’m a cancer genomics researcher.
Here are a few of my skills:
- Python (scikit-learn, PyTorch, NumPy, PyQt5)
- R (DESeq2, Shiny, Seurat, ggplot2)
- Linux (Servers, HPC, Shell)
- Single-cell, ATAC-seq, RNA-seq, ChIP-seq, Genome Assembly
š¬ Experiences
Advisor: Dr. Jindan Yu. I conduct computational research on prostate, kidney, and EMPD cancers, employing cutting-edge methods such as single-cell RNA-seq, spatial transcriptomics, and ATAC-seq.
Grading assessments such as papers and reports, tests, quizzes, homework. Assisting in the preparation of learning materials. Providing students with guidance in interpretation of cours subject matter. Instructor: Dr. Rebeca James.
Conducting computational research on differentially expressed genes in human disorders using various programming and bioinformatics tools. Training machine learning models for medical image analysis (MRI, Ultrasonography). Writing literature review papers on various research topics. Advisor: Dr. Fatemeh Karami.
Editorial board member at the Rouyesh scientific magazine. This position involves writing scientific articles across a wide range of subjects to captivate both academic and non-academic audiences.
š Education
Aug 2024 - Aug 2029
PhD in Bioinformatics
School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA
GPA:
4.0/4.0
Aug 2024 - Aug 2025
MSc in Bioinformatics
School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA
GPA:
4.0/4.0
Sep 2020 - Feb 2024
Bachelor of Science in Cell and Molecular Biology
Department of Biology, College of Convergent Sciences and Technologies, Science and Research Branch, Islamic Azad University, Tehran, Iran
GPA:
3.9/4.0
āļø Projects
80 ā
Linux
Shell
Python
Arch Linux for Scientists
Configuration and bootstrap for Arch Linux, customized for scientists and researchers who use Linux as their primary operating system
30 ā
Shell
Linux
Rofi Noter
A bash script that facilitates seamless management of notes on Linux.
R
Primer 3
Shiny
Primer X
R-Shiny interface to perform primer quality analysis using the Primer3 library.
Python
Biopython
PyQT5
<Genome/X>
GUI user interface for Biopython and other bioinformatics related Python packages.
Python
beautifulsoup
Universal sentence encoder
Spacy
Academ.AI
This Python script is designed to scrape Google Scholar, allowing users to extract research titles and abstracts from any scholar's profile. It also has the capability to generate graphs that visualize the similarities between the research titles.
10 ā
Python
Anki
Ankinator
Extract new words from text files, and create Anki flash cards out of them.
